Popular Supermarkets and Specialty Stores in Tokyo for Travelers to Japan
In recent years, more stores in Japan have started to carry gluten-free and natural food products.
I’ve put together a selection of supermarkets and specialty stores in Tokyo that carry gluten-free and natural food products, many of them located near train stations. If you’re visiting Tokyo, you may enjoy stopping by some of these stores along the way.
**Please note that the information provided may change. If you have celiac disease or food allergies, please check with the store in advance, including the possibility of cross-contact.
【Marunouchi Line Area】— Tokyo Station & Shinjuku
This area stretches west to northwest from Tokyo Station, with major stations including Tokyo, Ginza, Akasaka-mitsuke, Shinjuku-sanchome, and Shinjuku.
The area around Tokyo Station and Otemachi is known for its office buildings, while Ginza is one of Tokyo’s major shopping districts. Shinjuku is a bustling commercial area with large department stores and shopping complexes.
It’s a convenient area for exploring some of Tokyo’s central shopping districts.
| Name / Website | Access | Address / MAP |
|---|---|---|
| Biople Gransta Marunouchi | Directly connected to Tokyo Station | 1-9-1 Marunouchi, Chiyoda-ku, Tokyo, Gransta Marunouchi B1F, outside the ticket gates |
| Seijo Ishii Gran Gate Tokyo Station | Inside JR Tokyo Station, near the Keiyo Underground Yaesu Gate and Keiyo Underground Marunouchi Gate | 1-9-1 Marunouchi, Chiyoda-ku, Tokyo |
| Seijo Ishii Shin-Marunouchi Building | Approx. 3-minute walk from the Marunouchi Underground Central Exit of JR Tokyo Station | Shin-Marunouchi Building B1F, 1-5-1 Marunouchi, Chiyoda-ku, Tokyo |
| Natural House Yurakucho Itocia | Approx. 1-minute walk from JR Yurakucho Station | Itocia B1F, 2-7-1 Yurakucho, Chiyoda-ku, Tokyo |
【Hibiya Line & Oedo Line Area】— Roppongi, Azabu-juban & Ueno
This area stretches south and southwest, as well as northeast, from Tokyo Station. Major stations include Ginza, Hibiya, Roppongi, Azabu-juban, Tsukiji, Ningyocho, and Ueno-okachimachi.
Ginza and Roppongi are lively commercial and shopping districts, while Azabu-juban has a more relaxed residential atmosphere. Ningyocho and Tsukiji also retain some of the traditional character of Tokyo. The atmosphere varies considerably from one area to another.
| Name / Website | Access | Address / MAP |
|---|---|---|
| National Azabu Supermarket | Approx. a 3-minute walk from Hiroo Station Exit 1 on the Tokyo Metro Hibiya Line. | 4-5-2 Minami-Azabu, Minato-ku, Tokyo |
| 15/e organic Azabu-juban | Approx. a 1-minute walk from Azabu-juban Station on the Toei Oedo Line and Tokyo Metro Namboku Line. | 1-7-8 Azabu-juban, Minato-ku, Tokyo |
| Bio c’ Bon Azabu-juban | Approx. a 3-minute walk from Azabu-juban Station Exit 7 on the Toei Oedo Line and Tokyo Metro Namboku Line. | 2-9-2 Azabu-juban, Minato-ku, Tokyo |
| Bioral PARCO_ya Ueno | Approx. a 1-minute walk from Ueno-okachimachi Station on the Toei Oedo Line. | PARCO_ya Ueno B1F, 3-24-6 Ueno, Taito-ku, Tokyo |
【Ginza Line & Toyoko Line Area】— Omotesando, Shibuya & Daikanyama
This area stretches west to southwest from Tokyo Station, with major stations including Ginza, Omotesando, Shibuya, and Daikanyama.
Omotesando and Shibuya are major fashion and shopping districts, while Daikanyama has a more relaxed and stylish atmosphere. The area is enjoyable to explore on foot, with everything from popular shops to independent specialty stores. Ginza, in particular, is a popular shopping destination for many international visitors.
| Name / Website | Access | Address / MAP |
|---|---|---|
| BEYOND SWEETS Omotesando | Approx. a 2-minute walk from Omotesando Station Exit A4 on the Tokyo Metro Ginza Line. | 3-13-9 Minami-Aoyama, Minato-ku, Tokyo, Aoyama Patio 1F |
| 15/e organic Omotesando | Approx. a 6-minute walk from Omotesando Station on the Tokyo Metro Ginza Line. | 5-42-1 Jingumae, Shibuya-ku, Tokyo |
| Bio c’ Bon GINZA SIX | Approx. a 2-minute walk from Ginza Station Exit A3 or a 3-minute walk from Higashi-ginza Station Exit A1 on the Tokyo Metro. | GINZA SIX B2F, 6-10-1 Ginza, Chuo-ku, Tokyo |
| Bio c’ Bon Jiyugaoka | Approx. a 2-minute walk from Jiyugaoka Station on the Tokyu Toyoko and Oimachi Lines. | 1F, NEWNO Jiyugaoka, 2-11-21 Jiyugaoka, Meguro-ku, Tokyo, Japan |
【Odakyu Line & Inokashira Line Area】— Shimokitazawa, Kyodo & Kichijoji
This area stretches west to west-southwest from Tokyo Station, with major stations including Shimokitazawa, Kyodo, Meidaimae, and Kichijoji.
As you move farther from central Tokyo, residential neighborhoods become more common. Shimokitazawa is known for its independent shops and lively local atmosphere, while Kichijoji combines large shopping complexes with smaller independent stores. Compared with central Tokyo, the area has a more relaxed atmosphere and is a good place to discover unique local shops.
| Name / Website | Access | Address / MAP |
|---|---|---|
| Bioral Shimokitazawa Station Front | Approx. a 1-minute walk from Shimokitazawa Station South-West Exit on the Odakyu Line and Keio Inokashira Line. | 2-21-22 Kitazawa, Setagaya-ku, Tokyo, “tefu” lounge 1F |
| Kyodo Natural Food Center | Approx. a 2-minute walk from Kyodo Station on the Odakyu Line. | 2-3-7 Kyodo, Setagaya-ku, Tokyo |
| Natural Food F&F Acorde Yoyogi-Uehara | Approx. a 1-minute walk from Yoyogi-Uehara Station on the Odakyu Odawara Line | 3-8-5 Nishihara, Shibuya-ku, Tokyo, Japan Acorde Yoyogi-Uehara Building A, 1F |
| Crayon House Kichijoji | Approx. 6-minute walk from Kichijoji Station. | 2-15-6 Kichijoji-Honcho, Musashino, Tokyo (Taisho-dori) |
【Keio Line Area】— Shinjuku, Sasazuka, Sengawa & Fuchu
This area extends west from Tokyo Station, with major stations including Shinjuku, Sasazuka, Meidaimae, Sengawa, Chofu, and Fuchu.
As you move away from Shinjuku, residential neighborhoods become more common. Sasazuka, Sengawa, and Chofu have local shopping streets, supermarkets, and natural food stores that serve the everyday needs of residents. The area has a quieter atmosphere than central Tokyo while still offering convenient access to the city.
| Name / Website | Access | Address / MAP |
|---|---|---|
| Bioral Shinjuku Marui | Directly connected to Shinjuku-sanchome Station on the Tokyo Metro Approx. a 5-minute walk from the East Exit of JR Shinjuku Station | Shinjuku Marui Main Building B1F, 3-30-13 Shinjuku, Shinjuku-ku, Tokyo |
| Beauty Apothecary Isetan Shinjuku | Directly connected to Shinjuku-sanchome Station on the Tokyo Metro Approx. a 5-minute walk from the East Exit of JR Shinjuku Station | Isetan Shinjuku Main Building B2F, 3-14-1 Shinjuku, Shinjuku-ku, Tokyo |
| Una Casita Sasazuka | Directly connected to Sasazuka Station on the Keio Line | Keio Crown Street Sasazuka, 1-56-18 Sasazuka, Shibuya-ku, Tokyo |
| Natural Food F&F Sengawa | Approx. a 1-minute walk from Sengawa Station on the Keio Line | Pearl Sengawa II 1F, 1-47-11 Sengawa-cho, Chofu, Tokyo |
| Kodawariya Chofu | Approx. a 3-minute walk from Chofu Station on the Keio Line | Chofu PARCO B1F, 1-38-1 Kojima-cho, Chofu, Tokyo |
| Bioral Kunitachi Station Front | Approx. a 1-minute walk from Kunitachi Station on the JR Chuo Line | nonowa Kunitachi SOUTH 1F, 1-1-52 Naka, Kunitachi, Tokyo |
